Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRSWPDFAAFLLTILTVTWIILTWGLHISDIVPGGEKGIWYKLIPLFLGIISTISVFFVKEKLVKWILLGFNILLLILIYFVYHIGEIGMF
2BG9 Chain:C ((233-351))
-------------------------------------------ITPCVLISFLAALAFYLPA------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2BG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9339 for 77 contacts (-121.3/contact) +
2D Compatibility (PS) -1845 + (NN) 296 + (LL) 6900
1D Compatibility (HY) -1600 + (ID) 150
Total energy: -5738.0 ( -74.52 by residue)
QMean score : -0.089
(partial model without unconserved sides chains):
PDB file :
Tito_2BG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BG9-query.scw
PDB file :
Tito_Scwrl_2BG9.pdb
: