Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MWKKHKWLIIAVLLLVIYVAPLFILGGNSHVRIHDNLDSNVTWYKMVLDSGDYTAKVG--TANIDQIMDDSVPRDSFDSEFV--GIDWLYMIFSTPIAFAMSQLITRVFAFLGLFLWARDYLIKDKKYLVPIYFVSLAFALTPFWPSGMLSTLGMPLALWAFLNIRNNKRRIWNVVILTLLPFYSSLILGFCFFLVMVGCIWLYDVFKKKQVHIRFLLSMLYMGLIYVIVNYRFIYAMFLHPEPDSRSEFSLPNLSFLSSIRLSFKNFIFGHTHDQALAGYVILPILLLVLVLIIIKREWVKEKLFLWLFGFNLFLSFWYGFWWYRGWNVIKEHVEIMRTFNFSRFHFLQPFLFYGLFALAIVYLIKKGNWWRKLAYVAIVLQLIVVFANNSEIYYRTGNGSPSINQFYATEQMEEIKDYIGKPQSSYRVGSIGLHPSVSQESGFYTVDGYVNSYPLAYKRAFRKIIAGELDKSPVLEDYYDNWGNRCYIFSAELGKNYDFGKDSKKHIKQLDFNTEAFKKVGGEYVLSAVPIDNASEVGLQFEKAFDNKESYWKIYLYKATN |
| 3JB2 Chain:A ((103-162)) | -----------------------------HVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3JB2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2351 for 316 contacts (-7.4/contact) +
2D Compatibility (PS) -5819 + (NN) -2064 + (LL) 41572
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: 26638.0 ( 84.30 by residue)
QMean score : -0.019
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