Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLFIKASPLPNEVSRSSQVAETFMAEYKAKNPSDTVEELVLYNTEVPLLDLELMTAGRELQAGKAFTDLAPDVQKKLNAYNALTEQFLAADKYVFVFPLWNLGIPPLLKAYIDTFVIAGKSFRYTEHGPEALLKDKKAILIHGSGGIYSAGPTSSFTHGEPYLRTILQFIGINVVPSIFVEGIDHNPSKEAEIVAAAKAVAQESATEF
2Z9D Chain:A ((1-192))
-SKVLVLKSSILAG-YSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALRPSDA-----PLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVT---PYLSTFLGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKA---------
General information:
TITO was launched using:
RESULT:
Template:
2Z9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116881 for 1448 contacts (-80.7/contact) +
2D Compatibility (PS) -21061 + (NN) -6302 + (LL) 1472
1D Compatibility (HY) -13600 + (ID) 3950
Total energy: -160322.0 ( -110.72 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_2Z9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z9D-query.scw
PDB file :
Tito_Scwrl_2Z9D.pdb
: