Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LMVKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFSPTVIVAAITAKIQKAKLPTHVEATRKDGFEKDSVILLEQIRTIDKQR--LTDKITHLDEDLM---AKVNKALEVSLGVVEF
3NFC Chain:A ((10-107))
-----GDLIWVDFD---------HRPAVVLSPFMYN--NKTGMCLCVPCTTQSKGYPFEVVLS---G----GVALADQVKSIAWRARGATKKGTVAPEELQLIKAKIN------------
General information:
TITO was launched using:
RESULT:
Template:
3NFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30236 for 511 contacts (-59.2/contact) +
2D Compatibility (PS) -8175 + (NN) 2128 + (LL) 2484
1D Compatibility (HY) -3600 + (ID) 1150
Total energy: -38549.0 ( -75.44 by residue)
QMean score : 0.219
(partial model without unconserved sides chains):
PDB file :
Tito_3NFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NFC-query.scw
PDB file :
Tito_Scwrl_3NFC.pdb
: