Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTFWQDMMNF------FSYDNLMYWLSEYRNLGPLLAFLLPFIEAFLPFLPF------IVFVVVNVNAYGLLIGFLISVIAAIAGSLCVFLLA------RKFGQTRFLRFISGHKQIKRVMEWIDRH----GFSPIFILLVMPFTPSSAVNIVAGLSKIKVYQFILALVGGKLIKVFAISYIGYDFVDL-----------IHQPLKLAILAVSVVILWFVGKRLEHWMS-GKNLK---------------------- |
1A4U Chain:A ((1-254)) | MDLTNKNVIFVAALGGIGLDTSRELVK--RNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQV-PVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEANKNGAIWKLDLGTLEAIEWTKHWDSHI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A4U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216273 for 1500 contacts (-144.2/contact) +
2D Compatibility (PS) -21077 + (NN) -4787 + (LL) 116
1D Compatibility (HY) 800 + (ID) 1650
Total energy: -242871.0 ( -161.91 by residue)
QMean score : 0.259
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