Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEKNYKFLLWIYIFWFLGSVLLVSLHIIPPELTAVQSLFLVFTGVFAAVFFIMQYGKWLGSAITLLIFVVSTCIEWMQLSYTDEYIGSTLGGSVYGIPITMGFIWVGM-VAGTHIIAREITLKINIDWIRGGIYSFIAATMVMIFEVLIEPITMQSKQLYITQNGFTILQLSDFINWWLLGLILHLMIYFILSLTDSWERLKY--PDLKSEIVIVYWIIIAFFVFLSFYLDLWTSIAIIIVSNIIFTACYFFSLEKETQTKKKSE--
4QT4 Chain:A ((1-189))
----------MVKMIVGLGN----------------------------------PGSKYEKTKHNIGFMAIDNIVKNLDVTFTDDKNFKAQIGSTFINHEKVYFVKPTTFMNNSGIAVKALLTYYNID----------ITDLIVIYDDL----DMEVSKLRLRSKG------SAGGHNGIKSIIAHIG-------TQEFNRIKVGIGRPLKGMTVINHVMGQF--------NTEDNIAISLTLDRVVNAVKFYLQENDFEKTMQKFNG
General information:
TITO was launched using:
RESULT:
Template:
4QT4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -206396 for 1479 contacts (-139.6/contact) +
2D Compatibility (PS) -19419 + (NN) -3526 + (LL) 9008
1D Compatibility (HY) -6000 + (ID) 1500
Total energy: -227833.0 ( -154.05 by residue)
QMean score : 0.170
(partial model without unconserved sides chains):
PDB file :
Tito_4QT4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QT4-query.scw
PDB file :
Tito_Scwrl_4QT4.pdb
: