Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIIIATANKGKAKEFEKIFAKFNIEVATLA-DFPEIGEIEETGTTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSA---RYAGVAHDDAKNNEKLLKNLEGVEPDKRTARFHCTLAVATPSEKTSFYTGEVEGVIAEQLCGTNGFGYDPLFFLPEFG-LTMAEIPAEKKNEISHRANAIKQLEKDLVEVVEKVTKK
2DVN Chain:A ((2-174))
--KIFFITSNPGKVREVANFLGTFGIEIVQLKHEYPEI-----QAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFIESLKGFPGVYSSYVYRTIGL--------EGILKLMEGAE--DRRAYFKSVIGFYIDGKAYKF-SGVTWGRISNEKRGTHGFGYDPI-FIPEGSEKTFAEMTIEEKNALSHRGKALK----------------
General information:
TITO was launched using:
RESULT:
Template:
2DVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56139 for 1336 contacts (-42.0/contact) +
2D Compatibility (PS) -18053 + (NN) -7753 + (LL) 2400
1D Compatibility (HY) -12800 + (ID) 3100
Total energy: -95445.0 ( -71.44 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_2DVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DVN-query.scw
PDB file :
Tito_Scwrl_2DVN.pdb
: