Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VQQINWKKNVSFRSGSPAFTLLETILSITIILSISLLIPLFFQCYNKTIQLSNIDQTTEWQLFLIQTRLELEKATNIQID----------------GNKLSFSNGK-------------DLITYSKYNDLVRRQV----N---GKGHEPLLTNVKDYQLIKKE---------------KQLHLTVQDSNTQIYTSVFALPEVVSNP |
2RET Chain:B ((16-169)) | ------------------------------------------------------ARLNELQRALVMMDSDFRQIALRQTRTSKKLLHWADYLLDSDNKGIMFARLGWHNPQQQFPRGEVTKVGYRIKDERLERVWWRYPDTPQEGVVTPLLSDVEELNVRFYDGKQWINEWSNELTLPAAISVELTLKDYGKIARTYLTPE----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RET.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4594 for 614 contacts (-7.5/contact) +
2D Compatibility (PS) -10488 + (NN) -2387 + (LL) 4856
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -16463.0 ( -26.81 by residue)
QMean score : 0.413
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