Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKDLQDYVAIVNDWPKKGIVFKDITPLMNDGEAYRFATDKIVEYAKELKIDIIVGPEARGFIIGCPVAYALGIGFAPVRKPGKLPRETIEMEYDLEYGTN-KLSMHSDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGIVAGCAFLIELKELEGHKKLNGYDRLILMKL
1L1R Chain:A ((3-144))
MSVADAHALIKTIPDFPTKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCETAG--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1L1R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92595 for 1002 contacts (-92.4/contact) +
2D Compatibility (PS) -14649 + (NN) -1211 + (LL) 2680
1D Compatibility (HY) -13200 + (ID) 2600
Total energy: -121575.0 ( -121.33 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_1L1R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L1R-query.scw
PDB file :
Tito_Scwrl_1L1R.pdb
: