Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIYFDNSATTKPNAAVLETYTKVASNYFANPSSLHRFGAKSKELLDASRKQIAAMMSALPEEIIFTSGGTEGNNLAIKGLVYSYQ----NRG---KHIITSSIEHPSVRVVMEEL-EQEGFTVKYLPVDK-NGVIKLEELKAALTDETILVSIMGVNNEVGSIQPLQEIGEMLSVLEN---------TFFHVDFVQAIGKIPLTLDANSIDLLTFSGHKFHALRGTGILFKR---KNVHLHPEILGGGQEMGYRSGTENLAGNVALAKALRLTLENEPRKEA-LIEIRDYLLTKI-AQMSDMTVHTKQSVAA----PHIVCFSAKGHRGEILVHALEKEDIYISTTSACSSKQKLASSTLKAMGVTDEEATGAVRVSLSYENRLSEAKIFIQKLQEIIENLNKVVK |
| 3GZD Chain:C ((27-436)) | -VYMDYNATTPLEPEVIQAMTKAMWEAWGNPSSPYSAGRKAKDIINAARESLAKMIGGKPQDIIFTSGGTESNNLVIHSVVKHFHANQTS--GAKPHFITSSVEHDSIRLPLEHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMPVPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR-IGALYIRGLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVRDYLEERLEAEFGQKRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAAC----DQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GZD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149002 for 3252 contacts (-45.8/contact) +
2D Compatibility (PS) -40462 + (NN) -21080 + (LL) 524
1D Compatibility (HY) -18800 + (ID) 6450
Total energy: -235270.0 ( -72.35 by residue)
QMean score : 0.494
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