Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTLTNKLAEKEHAAVVTYIMGGDGGLDNLEEQLLFLEKSGVSAIEIGIPFSDPVADGPIIQLAGLRALKEQVSLEAILN--KLAMSKVQIPLIIMSYINPIFHLGIPKFVELVQKTPVKGLIIPDLPYEHQKLITPELQGTDIALIPLVSLTSPKERLEEIAKQAEGFIYAVTVNGTTGVRSEFDAHIDSHLAYLKSISPVPVLAGFGVSSIEH-VEKFAHVCDGVIIGSKVVQMLHEEKTAELGAFLQKAAEVRIKN
1WDW Chain:A ((3-243))
------------KDGSLIPYLTAGDPDKQSTLNFLLALDEYA-GAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLY------EEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIG-EKGREATEFLKKKVE-----
General information:
TITO was launched using:
RESULT:
Template:
1WDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188169 for 1944 contacts (-96.8/contact) +
2D Compatibility (PS) -26085 + (NN) -19941 + (LL) 1904
1D Compatibility (HY) -14000 + (ID) 3950
Total energy: -250241.0 ( -128.72 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_1WDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WDW-query.scw
PDB file :
Tito_Scwrl_1WDW.pdb
: