Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKVRGFEVVNEASRKFPEQTISLPIRGDKGSAGYDFFS--NETVTIVPGEKHIFWTDIKSYMQEDEVLNIYV-RSSIGIKKGLLLCNGTGIIDSSYYSNPGNDGNIGIAIKNFSNEPVSIEAGERVAQGVFQKYLVADTDIV----ANESRVGGVGSTGR
2HRM Chain:A ((16-137))
-------------KEFP-----LPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDY------QGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFD--------------
General information:
TITO was launched using:
RESULT:
Template:
2HRM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44173 for 715 contacts (-61.8/contact) +
2D Compatibility (PS) -12746 + (NN) -3542 + (LL) 1272
1D Compatibility (HY) -9200 + (ID) 1900
Total energy: -70289.0 ( -98.31 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_2HRM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HRM-query.scw
PDB file :
Tito_Scwrl_2HRM.pdb
: