Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLIDEITKSQLNPDVPNFRPGDTVRVHAKVVEGTRERIQLFEGVVIKRRGAGISETFTVRKISNSVGVERTFPVHTPRIAKLEVIRRGKVRRAKLYYLRNLRGKAARIKEIR
1NKW Chain:N ((24-121))
----------------LPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSDR
General information:
TITO was launched using:
RESULT:
Template:
1NKW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 410668 for 3916 contacts (104.9/contact) +
2D Compatibility (PS) -9016 + (NN) 2989 + (LL) 892
1D Compatibility (HY) 4800 + (ID) 500
Total energy: 409833.0 ( 104.66 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_1NKW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NKW-query.scw
PDB file :
Tito_Scwrl_1NKW.pdb
: