Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGIYLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGNERVEVRLTDVDHAEDAVIINKNE
4P82 Chain:A ((4-181))
--QKAVILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLS-KKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNIPTSKSEKVMVQLDEVDQ-NDLVAIYEN-
General information:
TITO was launched using:
RESULT:
Template:
4P82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92760 for 1397 contacts (-66.4/contact) +
2D Compatibility (PS) -19746 + (NN) -8119 + (LL) 708
1D Compatibility (HY) -20400 + (ID) 6000
Total energy: -146317.0 ( -104.74 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_4P82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P82-query.scw
PDB file :
Tito_Scwrl_4P82.pdb
: