Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGEPIYIVGGAEIYRLFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
3JVX Chain:A ((9-166))
-VSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFGGAQIYDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHVYEK-
General information:
TITO was launched using:
RESULT:
Template:
3JVX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95113 for 1165 contacts (-81.6/contact) +
2D Compatibility (PS) -16884 + (NN) -5420 + (LL) 128
1D Compatibility (HY) -18400 + (ID) 3750
Total energy: -139439.0 ( -119.69 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_3JVX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JVX-query.scw
PDB file :
Tito_Scwrl_3JVX.pdb
: