Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNGKQVMVGGLSLLLVGAGLGAFGSTAQAATDDASVMPDISNKQVLVGYWHSWKSSGKDGYQQGTSADIALKDTPKAYNVVDVSFMKGDGVNRIPTFKPVGINDSDFRAQVGALNKEGRAVLLALGGADGHVEL-KAGDEEAFANEIIRQVETYGFDGLDIDLEQSAITAGDNKTV----------IPAALKIVKDHYKAEGKNFLITMAPEFPYLKPG-SAYES----YLTSLANYYD---YIAPQLYNQG-GDGVWVDETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIPANKFVFGLPANVDAAATGYVTDPQIVKNVFTRLQAKGTP---------------VKGIMTWSVNWDAGKNKAGVPYNNSFSNAYGPIVGTK |
| 3N17 Chain:A ((7-322)) | -------------------------------------------KLLVGYWHN--------FDNGTGI-IKLKDVSPKWDVINVSFGETGGDRSTVEFSPVYGTDADFKSDISYLKSKGKKVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLQSGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHY---GPDFLLSMAPETAYVQGGYSAYGSIWGAYLPIIYGVKDKLTYIHVQHFNAGSGIGMDGNNYNQGTADYEVAMADMLLHGFPVGG-NANNIFPALRSDQVMIGLPAAPAAAPSGGYISPTEMKKALNYI-IKGVPFGGKYKLSNQSGYPAFRGLMSWSINWDA-KN------NFEFSNNY------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3N17.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123701 for 2298 contacts (-53.8/contact) +
2D Compatibility (PS) -29528 + (NN) -9964 + (LL) 2504
1D Compatibility (HY) -21600 + (ID) 5200
Total energy: -187489.0 ( -81.59 by residue)
QMean score : 0.462
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