Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDLPLSKRVKGVAPSPTLAITAKAKQMKQEGIDVIGLGAGEPDFNTPQNIIDAAIESMNKGFTKYTPSSGIIELKQAIVDKLKKDQFLNYE-TNQIFVGTGAKHVLYSAFQTILDPGDEVIIPVPYWVTYPEQVKLAGGIPVFVETGFDADFKISAADFEKAITKKTKAIVLNSPNNPSGMCYTKEELIAIGEVAEKHQIYILSDEIYEKLYYGNKADLVSIASLSDRLYDLTIVINGVSKAYSMTGWRIGYAAANKEIIAGMSKLADHLTSNPTANAQYAALEAYVG--SQEVPEKMYQAFEERMERFYPELNSIPGFKPKKPDGAFYFFIEVKEAA-HKKGFQDVDAFVAALLEEAKVAVIPGSGFGMP--DYIRLSYATNPDLFQEAINRIKSFMK |
1GDE Chain:A ((2-384)) | ---ALSDRLELVSASEIRKLFDIAAGMK----DVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY-DDARHYSIASL-DGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTGLTSKKFSEL------MLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GDE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -224612 for 3411 contacts (-65.8/contact) +
2D Compatibility (PS) -41527 + (NN) -23654 + (LL) 904
1D Compatibility (HY) -32000 + (ID) 7550
Total energy: -328439.0 ( -96.29 by residue)
QMean score : 0.603
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