Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYLCENENAYRRRNSGNLEIEMSEITLRNRKPKRKIGKWIAIILGIIIVLVVAAFLYFRYAEKPVTNAETEALDRISGQVDLKTTDQFYLYNGPKEVYYVLTGKNSKNKNIIVWVPKKKSDKVYVKFASDGITEQQARDKVTKEKKPKKILHVNLGMEKETPIWEVAYLDKNDKLNYFDINFETGEWYREIENL
2GU3 Chain:A ((9-135))
----------------------------------------------------------------KEEGHEAAAAEAKKETDLAHVDQVETFVGKE-KYYVVKGTDKKGTALYVWVPADKKAKILSKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTGKILKNIT--
General information:
TITO was launched using:
RESULT:
Template:
2GU3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35443 for 947 contacts (-37.4/contact) +
2D Compatibility (PS) -13766 + (NN) -4820 + (LL) 6092
1D Compatibility (HY) -6800 + (ID) 1950
Total energy: -56687.0 ( -59.86 by residue)
QMean score : 0.631
(partial model without unconserved sides chains):
PDB file :
Tito_2GU3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GU3-query.scw
PDB file :
Tito_Scwrl_2GU3.pdb
: