Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIWNSIVGKIWSTIILLLIGILVISGFLVAMIYEKNNITRITNELEDKTASIITVMQENNEVISAENNNDSALILLDDTMGVIIEQNGKSVYQSQSPDTISSASANKLIQDKTLDKALEKDNSVTMKYNFKTEKSSLPVEISAQKFKLANGETGVVYVYQSYHDILKVNEKTMSTLIISGIIAIVITSILSFVFSSRMAFPLREMKKIAIAVSKGNFDNRVPTYTHDEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLHNWFFSPENTEKVLIPVALNELLNDTLEKKESQVGEITFADHTYVAILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDVARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIITLPLYK |
4BIX Chain:A ((70-296)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VTALERMMTSQQRL-------LSDISHELRTPLTRLQLGTALLRRRSGESKELER-----IETEAQRLDSMINDLLVMSRNQQK-NALVSETIKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYS-------HTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTD---------GTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIWLPLYK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BIX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93897 for 1577 contacts (-59.5/contact) +
2D Compatibility (PS) -23299 + (NN) -2510 + (LL) 28608
1D Compatibility (HY) -11600 + (ID) 3400
Total energy: -106098.0 ( -67.28 by residue)
QMean score : 0.487
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