Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIYFDHAATTKMSEAALEVFMSASREFFANSESLHDAGTKSAALLEKCRGSFAEILHVPSRGIMFTSGGTESNQIAIQTLL---HSTK---KKEVLVSPLEHASVWQQLEALEEAGACWLRLLPVDAF-GRVDPAVLSDMISPDTGLVIIQHVNSEIGSIQPIRELAHIAK-------QAG---VYFHTDIVQSFGKLDLTLDD--VTSFSISSHKIYGPKGAGLLFIK------PDVPMQVPLPNVHHEFGFRPGTVNVPAIAAFTTAAYDIMGNREKEARRIAELKKAICEALTAKVKVEGGLNTSPFILGITLPN----------MQGQEALLALNEADIQISTTSACSLRDPA--PSRTLLATGKTIEEASRFIRLSFGRENELSDSLIFKKELDKLLRKR |
| 3GZC Chain:A ((27-431)) | -VYMDYNATTPLEPEVIQAMTKAMWEAWGNPSSPYSAGRKAKDIINAARESLAKMIGGKPQDIIFTSGGTESNNLVIHSVVKHFHANQTGAKPHFITSSVEHDSIRLPLEHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMPVPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR-IGALYIRGLGEFTPLYPM---LFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVRDYLEERLEAEFGQKRIHLNSQFPGTQRLPNTCNFSIRGPRLQGH---VVLAQCRVLMASVGAACHSDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQ----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GZC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158574 for 3051 contacts (-52.0/contact) +
2D Compatibility (PS) -39178 + (NN) -22645 + (LL) 1248
1D Compatibility (HY) -16800 + (ID) 5600
Total energy: -241549.0 ( -79.17 by residue)
QMean score : 0.468
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