Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDWLTNSTAIIIILPVVVFILTMFFSSFKLK-----KSQRRIMLAAD------------LSTIFLIIAVHFFMIVLFNRSFLLYILLFLFILGIVIVVTAAKKEGEIQFRKILRGYWRLCFFIFALLYVALYLYGIVYSLVLMF
4LUQ Chain:C ((22-144))
DFDKTLTHPNGLVVERPVGFDARRSAEGFRFDEGGKLRNPRQLEVQRQDAPPPPDLASRRLGDGEARYKVEEDDGGSAGSEYRLWAAKPAGARWIVVSASEQSEDGEPTF--------ALAWALLERARLQ--------------
General information:
TITO was launched using:
RESULT:
Template:
4LUQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186466 for 769 contacts (-242.5/contact) +
2D Compatibility (PS) -11089 + (NN) 5114 + (LL) 2428
1D Compatibility (HY) 6400 + (ID) 750
Total energy: -184363.0 ( -239.74 by residue)
QMean score : 0.239
(partial model without unconserved sides chains):
PDB file :
Tito_4LUQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LUQ-query.scw
PDB file :
Tito_Scwrl_4LUQ.pdb
: