Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTEKKIDFKKEEKKFYAPKRKPERIFVPEMNFLMVDGKGDPD---GEEYQKAVQSLYAIAYTIKMSKMGETRLNGYADFVVPPLEGFWWSEEKFDLKDRDAWLWTSILRQPDFVTEEVLEWAKEVAQKKKPDVDTSRVKLVRFEEGECVQMMHIGPF-----SEEVKTVAELHQFMETEGLHNDTGAVRKHHEIYLSDPRKADPEKMKTILRLPVS |
3LUR Chain:A ((2-157)) | -------------------MEYQLQQLASLTLVGIKETYENGRQAQQHIAGFWQRCYQEGVIADLQLKN----N---G-DLAGILGLCIPE------LDGKMSYMIAVTGDNSA-------------------DIAKYDVITLASSKYMVFEAQGAVPKAVQQKMEEVHHYIHQYQ---ANTVKS---APFFELYQDGDT--TSEKYITEIWMPVK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LUR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -20288 for 1057 contacts (-19.2/contact) +
2D Compatibility (PS) -15700 + (NN) -4157 + (LL) 5056
1D Compatibility (HY) -6400 + (ID) 800
Total energy: -42289.0 ( -40.01 by residue)
QMean score : 0.303
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