Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQKLIYFLSQTH-IRSAIAEAWAKRLSLSNVKFISGSWHKSKSTPFIAEALNEFAIEPPESLSYSPSSELLADADLIVTIYDSAHETAPKFPANIQEKIIYWDIDDPEQEIALPQKWASYQEVCDNIALSVKNLEHVLIEA
1JFV Chain:A ((1-129))
MDKKTIYFISTGNSARSQMAEGWGKEILGEGWNVYSAGIETHGVNPKAIEAMKEVDIDISNHTSDLIDNDILKQSDLVVTLCSDADNNCPILPPNVKKE--HWGFDDP-----AGKEWSEFQRVRDEIKLAIEKFK------
General information:
TITO was launched using:
RESULT:
Template:
1JFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56326 for 1026 contacts (-54.9/contact) +
2D Compatibility (PS) -13758 + (NN) -5588 + (LL) 1948
1D Compatibility (HY) -9200 + (ID) 1900
Total energy: -84824.0 ( -82.67 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_1JFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JFV-query.scw
PDB file :
Tito_Scwrl_1JFV.pdb
: