Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHLTDMGIQAVSDDVF-TTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPAFVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAPIFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWEFN
2C4N Chain:A ((4-239))
----KNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVD-VPDSVFYTSAMATADFLRRQEGKKA-YVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDT---HGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSW-----------
General information:
TITO was launched using:
RESULT:
Template:
2C4N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128520 for 2043 contacts (-62.9/contact) +
2D Compatibility (PS) -25962 + (NN) -16687 + (LL) 1712
1D Compatibility (HY) -22000 + (ID) 4100
Total energy: -195557.0 ( -95.72 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_2C4N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C4N-query.scw
PDB file :
Tito_Scwrl_2C4N.pdb
: