Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKSGLKG
3KTH Chain:A ((3-191))
---IPTV----------YDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH------
General information:
TITO was launched using:
RESULT:
Template:
3KTH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120632 for 1364 contacts (-88.4/contact) +
2D Compatibility (PS) -19643 + (NN) -9108 + (LL) 964
1D Compatibility (HY) -23200 + (ID) 6800
Total energy: -178419.0 ( -130.81 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_3KTH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KTH-query.scw
PDB file :
Tito_Scwrl_3KTH.pdb
: