Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQLFFRYGSMNSGKTIEILKVAHNYEEQNKTVAIFTSGIDDRDQVGFISSRIGLKREATPIFSDTNIFEIVVNIKPKPNCVLLDESQFLEKEHVFQLAKIVDELNIPVIAYGLKNDFRNELFEGSKYLLLYADKLEEMKTICWFCAKKATMVLRVDDKGKPVYTGEQIMIGGNDHYYPVCRKCHANPPIK
2ORV Chain:A ((26-189))
--------GPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRY------------MEALPACLLRDVAQEALGVA----VIGIDEGQFFP--DIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEK------EVEVIGGADKYHSVCRLCY------
General information:
TITO was launched using:
RESULT:
Template:
2ORV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79605 for 1162 contacts (-68.5/contact) +
2D Compatibility (PS) -16402 + (NN) -6305 + (LL) 1908
1D Compatibility (HY) -8800 + (ID) 1800
Total energy: -111004.0 ( -95.53 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_2ORV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ORV-query.scw
PDB file :
Tito_Scwrl_2ORV.pdb
: