Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VKKYFITIMILLFGALSLSACQKDDEVENSSPPKVDLKNEIPIILIHGSGGDTHSLDEMADHLMNKYKSSNEAMSMSINSNGKIAYQGALTKDAKRPIIKFGFDQNQ---ATPDDWSKWLKIAMEDLKSRYGFTQMDGVGHSNGGLALTYFAEDYSNDNAVPTLRKLVAIGSPFNDLDPDDNGDGLAFNKLPSNTPQLDYFIDKKTKISTDLEVLSIAGALSEDNLTDGIVPTNSSLASRLFMPNNAKVYME--DLQVGESAIHQTLHETSESIEKTHWFLEKSSPEKKEIKLISK |
3LP5 Chain:A ((3-238)) | --------------------------------------RMAPVIMVPGSSASQNRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAVWLNTAFKALVKTYHFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTST----------TAKTSMFKELYRYRTGLPESLTVYSIAGTENY--TSDGTVPYNSVNYGKYIFQDQVKHFTEITVTG--ANTAHSDLPQNKQIVSLIRQYLLAETMPD-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LP5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44365 for 1932 contacts (-23.0/contact) +
2D Compatibility (PS) -24755 + (NN) -14067 + (LL) 3632
1D Compatibility (HY) -14000 + (ID) 2900
Total energy: -96455.0 ( -49.92 by residue)
QMean score : 0.403
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