Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARKTNTRKRRVKKNIESGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLGFKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPGSGREAAIRALQAAGLEVTAIKDVTPVPHNGCRPPKRRRV
4WT8 Chain:K ((1-116))
------------KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR-
General information:
TITO was launched using:
RESULT:
Template:
4WT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30949 for 854 contacts (-36.2/contact) +
2D Compatibility (PS) -13224 + (NN) -10052 + (LL) 1288
1D Compatibility (HY) -8000 + (ID) 3400
Total energy: -64337.0 ( -75.34 by residue)
QMean score : 0.712
(partial model without unconserved sides chains):
PDB file :
Tito_4WT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WT8-query.scw
PDB file :
Tito_Scwrl_4WT8.pdb
: