Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLDKELVNLHGSAKNADEAIVQAGELLVNAGYVSEQYVEKMVESYHENGAYFVIAP-QIAIPHARPTDGVENSAVSLVVLKDGVNFGHAAND----PVRLVFGLAATSSEAHLKVIQKIVSLLSNNDNIEKMIHSED---YQAIGELVEG
4M8Q Chain:C ((39-155))
----------------------------LINDGMVVSDFADHVITREQNFPTGLPVEPVGVAIPHTD-SKYVRQNAISVGILAEPVNFEDAGGEPDPVPVRVVFMLALGNWFDITNVLWWIMDVIQDEDFMQQLLVMNDDEIYQSI------
General information:
TITO was launched using:
RESULT:
Template:
4M8Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86959 for 715 contacts (-121.6/contact) +
2D Compatibility (PS) -11448 + (NN) -2395 + (LL) 2192
1D Compatibility (HY) -11200 + (ID) 1550
Total energy: -111360.0 ( -155.75 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_4M8Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M8Q-query.scw
PDB file :
Tito_Scwrl_4M8Q.pdb
: