Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKILNGTDQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPGKVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLIVKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKIIGAAAEAGASLDELKALGEKVIASVKTLGVALSPCTVPEVGHPGFELGDDEIELGIGIHGEPGFTREKI---------MPSASLAKQLYERI---------------SNESKLLAGDKVVVLVNGMGATPLMEQYVFANDVHELLKNAGVQVEKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIAW
3PNM Chain:A ((10-351))---------DVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGAEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSIGIALGACT-------SFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDTLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDET-LALWDAPVHTPA-


General information:
TITO was launched using:
RESULT:

Template: 3PNM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168111 for 2833 contacts (-59.3/contact) +
2D Compatibility (PS) -33910 + (NN) -12005 + (LL) 832
1D Compatibility (HY) -28000 + (ID) 7350
Total energy: -248544.0 ( -87.73 by residue)
QMean score : 0.536

(partial model without unconserved sides chains):
PDB file : Tito_3PNM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3PNM-query.scw
PDB file : Tito_Scwrl_3PNM.pdb: