Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSIKKSVIGFCLGAAALSMFACVDSSQSVMAAEKDKVEITWWAFPTFTQEKAKDGVGTYEKKVIKAFEKKNPNIKVKLETIDFTSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNGKLADLNDLFTDQFIKDVNNKNIIQASKSGDKAYMYPISSAPFYMAFNKKMLKDA--GVLKLVKEGWTTSDFEKVLKALKNKGYTPGSF-----FANGQGG---DQGPRAFFANLYSAPITDKEVTKYTTDTKNSVKSMKKIVEWIKKGYLMNGSQYDGSADIQNFANGQTAFTI--LWAPAQPKTQAKLLESSKVDYLEVPFPS-EDGKPDLEYL-VNGFAVFNNKDENKVKASKKFITFIADDKKWGPKDVIRTGAFPVRTSFGDLYKGDKRMMKISKWTQYYSPYYNTIDGFSEMRTLWFPMVQSVS---NGDEKPADALKDFTQKANDTIKKAAK |
| 2FNC Chain:A ((27-375)) | ------------------------------------------------------------------------GIPVEVQYVDFGSIKSKFLTAAPQGQGADIIVGAHDWVGELAVNGLIEPIPN-FSD--LKNFYD-TALKAFSYGGKLYGVPYAMEAVALIYNKDYVDSVPKTMDELIEKAKQID--EEYGGEVRGFIYDVANFYFSAPFILGYGGYVFKETPQGL------------DVTDIGLANEGAVKGAKLIKRMIDEGVLTPGDNY-GTMD-SMFKEGLAAMIINGLWA-------IKSYKDAGINYGVAPIPELEPGVPAKPFVGVQGFMI-NAKSPNKVIAMEFLTNFIAR-KETMYKIYLADPRLPARKDVLELVKDNPDVVAFTQSASMGTPMPNV----PEMAPVWSAMGDALSIIINGQASVEDALKEAVEKIKAQIEKGSH |
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General information:
TITO was launched using:
| RESULT:
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Template: 2FNC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25200 for 2619 contacts (-9.6/contact) +
2D Compatibility (PS) -34801 + (NN) -7654 + (LL) 7368
1D Compatibility (HY) -22000 + (ID) 4650
Total energy: -86937.0 ( -33.19 by residue)
QMean score : 0.390
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