Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRTNKLKMRETMIAYAFLAPILLFFLIFVFAPMVMGFVTSFFNYSMTQFTFIGLANYNRMFHDSIFMKSLIN----TVIIVIGSVPVVVFFSLFVAANTYEKNVFSRSFYRCVFFLPVVTGSVAVTVVWKWIYDPMSGILNYILKSGHVIEQNISWLGDKHWALLAIIIILLTTSVGQP--IILYIAAMGNIDNSLCEAARVDGANEMQVFWQIKWPSLLPTTLYIAVITTINSFQCFALIQLLTSGGPNYSTST--------LMYYLYEKAFKLS---EYGYANTMGVFLAVMIALISFAQFKILGNDVEY |
4KHZ Chain:F ((260-505)) | ----------------------------------------------------GWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKP--AWFSDPTTARTMLIIV--NTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAIVN---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4KHZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -147567 for 1530 contacts (-96.4/contact) +
2D Compatibility (PS) -23893 + (NN) -9052 + (LL) 6856
1D Compatibility (HY) -22800 + (ID) 3050
Total energy: -199506.0 ( -130.40 by residue)
QMean score : 0.125
|
|
|