Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLLVVGSGGREHAIAKKLLASKDVDQVFVAPGNDGMTLDGL-DLVNIGISEHSRLIDFAKENEIAWTFIGPDDALAAGIVDDFNSAGLRAFGPTKAAAELEWSKDFAKEIMVKYNVPTAAYGTFSDFEKAKAYIEEQGAPIVVKADGLALGKGVVVAETVEQAVEAAQEMLLDNKFGDSGARVVIEEFLDGEEFSLFAFANGDKFYIMPTAQDHKRAFDGDKGPNTGGMGAYAPVPHLPQSVVDTAVETIIKPVLEGMIAEGRPYLGVLYAGLILTADGPKVIEFNSRFGDPETQIILPRLTSDFAQNIDDIM---MGIEPYITWQKDGVTLGVVVASEGYPLDYEK-----GVPLPEKTDGDIITYYAGAKFAENSKALLSNGGRVYMLVTTEGSVKAGQDKIYTQLAQQDTTGLFYRNDIGSKAIK |
3LP8 Chain:A ((22-440)) | MNVLVIGSGGREHSMLHHIRKSTLLNKLFIAPGREGMS--GLADIIDIDINSTIEVIQVCKKEKIELVVIGPETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEGKEISFFTLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNEPKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGKLGNESVELSKK--AALCVVVASRGYPGEYKKNSIINGIENIEKLP-NVQLLHAGTRREGNN--WVSDSGRVINVVAQGENLASAKHQAYAALDLLDWPDGIYRYDIGSC--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LP8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -232908 for 3682 contacts (-63.3/contact) +
2D Compatibility (PS) -46136 + (NN) -25130 + (LL) 300
1D Compatibility (HY) -33600 + (ID) 8450
Total energy: -345924.0 ( -93.95 by residue)
QMean score : 0.527
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