Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVCFVCLGNICRSPMAEFVM------ANLDKEDSLSVESRATSTWEHG-NPIHRGTQAILQRYQIPYINDKGSQPISKDDLAYFDYIIGMDEQNVKDLKALSQGTYDDKISLFCDGG---------VPDPWY--TGDFEETYRLVNDGCKQWLTLINNSRD
1D1Q Chain:A ((10-157))
---VAFIALGNFCRSPMAEAIFKHEVEKANLENRFN-KIDSFGTSNYHVGESPDHR-TVSICKQHGVK-INHKGKQ-IKTKHFDEYDYIIGMDESNINNLKKIQPEGSKAKVCLFGDWNTNDGTVQTIIEDPWYGDIQDFEYNFKQITYFSKQFLKKEL----
General information:
TITO was launched using:
RESULT:
Template:
1D1Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70784 for 1039 contacts (-68.1/contact) +
2D Compatibility (PS) -13698 + (NN) -2926 + (LL) 644
1D Compatibility (HY) -10800 + (ID) 2750
Total energy: -100314.0 ( -96.55 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_1D1Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D1Q-query.scw
PDB file :
Tito_Scwrl_1D1Q.pdb
: