Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGQKVHPIGMRVGIIRDWDAKWYA-EKEYADYLHEDLAIRKFINKELADASVSTIEIERAVNKVIVSLHTAKPGMVIGKGGANVDALRGQLNKLTGKQVHINIIEIKQPDLDAHLVGENIARQLEQRVAFRRAQKQAIQRTMRAGAKGIKTQVSGRLNGADIARAEGYSEGTVPLHTLRADIDYAWEEADTTYGKLGVKVWIYRGEVLPARKNTKGGK
1IBM Chain:C ((2-207))
-GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYIFLGEV-----------
General information:
TITO was launched using:
RESULT:
Template:
1IBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73525 for 1559 contacts (-47.2/contact) +
2D Compatibility (PS) -21383 + (NN) -2916 + (LL) 308
1D Compatibility (HY) -18800 + (ID) 5550
Total energy: -121866.0 ( -78.17 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_1IBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IBM-query.scw
PDB file :
Tito_Scwrl_1IBM.pdb
: