Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVPKRVKHRREFRGKMRGEAKGGKEVSFGEYGLQATTSHWITNRQIEAARIAMTRYMKRGGKVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKVMFEIAGVSEEVAREALRLASHKLPVKCKFVKREAE
4IOC Chain:J ((5-135))
----KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVY
General information:
TITO was launched using:
RESULT:
Template:
4IOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29133 for 897 contacts (-32.5/contact) +
2D Compatibility (PS) -13774 + (NN) -3550 + (LL) 436
1D Compatibility (HY) -10800 + (ID) 3900
Total energy: -60721.0 ( -67.69 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_4IOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IOC-query.scw
PDB file :
Tito_Scwrl_4IOC.pdb
: