Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKNKIIRFSLVGVLLAILCFSLFALLKPNSQQSSSQKLRNEDIKKISSQKRNKKLQLPAVSSKDWNLILVNRDH--KHEELSPDVV--PV--ENIYLDKRITKQATQFLEAARAIDSREHLISGYRSVAYQEKLFNSYVTQEMTSNPNLTRGQAEKLVKTYSQPAGASEHQTGLAMDMSTVDSLNESDPRVVSQLKKIAP---------QYGFVLRFPDGKTAETGVGYEDWHYRYVGVESAKYMAKHHLTLEEYITLLKENNQ |
4OAK Chain:A ((25-199)) | -------------------------------------------------------------------LQLINKNHPLKKNQEPPHLVLAPFSDHDVYLQPEVAKQWERLVRAT-GLEKDIRLVSGYRTEKEQRRLW-EYSLKE--------NGLA--YTKQFVALPGCSEHQIGLAIDVGL--KKQEDDDLICPHFRDSAAADLFMQQMMNYGFILRYPEDKQEITGISYEPWHFRYVGLPHSQVITAQKWTLEEYHDYLAQTVR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OAK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10244 for 1179 contacts (-8.7/contact) +
2D Compatibility (PS) -16871 + (NN) -2100 + (LL) 5492
1D Compatibility (HY) -14400 + (ID) 2950
Total energy: -41073.0 ( -34.84 by residue)
QMean score : 0.430
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