Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILDYNKLKQETKAIVVDIIERSALKKGQIFVLGLSSSEVSGGLIGKNSSSEIGEIIVEVILKELHSRGIYLAVQGCEHVNRALVVEAELAERQQLEVVNVVPNLHAGGSGQVAAFKLMTSPVEVEEI--VAHAGIDIGDTSIGMHIKRVQVPLIPISRELGGAHVTALASRPKLIGGARAGYTSDPIRKF
1V8D Chain:A ((40-225))
----MEGIRRAAQRAAEEFLQAFPMAPGSLFVLGGSTSEVL----GTRPSLEAAHAVLEGLLPPLLERGVHVAVQACEHLNRALVVERETARAFGKEEVAVFPHPKAGGAKATAAFLRFRDPVMVESLKAQAHGGMDIGGVLIGMHLRPVAVPLRLSVRKIGEAVLLAAKTRPKLVGGARAVYTREEMLKK
General information:
TITO was launched using:
RESULT:
Template:
1V8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126861 for 1491 contacts (-85.1/contact) +
2D Compatibility (PS) -19491 + (NN) -3119 + (LL) 548
1D Compatibility (HY) -10800 + (ID) 3800
Total energy: -163523.0 ( -109.67 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_1V8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8D-query.scw
PDB file :
Tito_Scwrl_1V8D.pdb
: