Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKFGKKLGFLALLMSIVLILGACGKTGLGNSTGNSTKNVTKKSAKNLKLGVSISTTNNPYFVAMKDGIDKYASNKKISIKVADAQDDAARQADDVQNFISQNVDAILINPVDSKAIVTAIKSANNANIPVILMDRG---SEGGKVLTTVASDNVAAGKMAADYAVKKL-GKKAKAFELSGVPGASATVDRGKGFHSVAKS--KLDILSSQSANFDRAKALNTTQNMIQGH---KDVQIIFAQNDEMALGAAQAVKSAGL---QNVLIVGIDGQPDAHDAIKKGDISATIAQQPAKMGEIAIQAAIDHYK--GKKVEKETI--SPIYL--VTKDNVEKYNW |
| 2VK2 Chain:A ((28-291)) | -----------------------------------------------------------------------AEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAF--DALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKN |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VK2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -73960 for 2015 contacts (-36.7/contact) +
2D Compatibility (PS) -26772 + (NN) -10287 + (LL) 3856
1D Compatibility (HY) -18000 + (ID) 4750
Total energy: -129913.0 ( -64.47 by residue)
QMean score : 0.521
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