Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAIVSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKLCKQLIETLVESMGITVPVAIHLDHGH-YDDALECIEVGYTSIMFDGSHLPVEENLEKAREVVAKAHAKGISVEAEVGTIGGEEDGIVGKGELA----PIEDAKAMVETGIDFLAAGIGNIHGPYPANWE-GLDLDHLKKLTEAVPGFPIVLHGGSGIPDDQ---------------------IQEAIKLGVAKVNVNTECQLAFCQATRDYAVEFNANEAEYMKKKLFDPRKFLKPGFDAITEAVEERIDVFGSANKA |
| 3C56 Chain:A ((2-306)) | --LVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMG-IDMAVGMVKIMCERYP-HIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGI----------AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKR-LTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANE---------DKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C56.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121452 for 2337 contacts (-52.0/contact) +
2D Compatibility (PS) -30467 + (NN) -20454 + (LL) 1548
1D Compatibility (HY) -23600 + (ID) 5450
Total energy: -199875.0 ( -85.53 by residue)
QMean score : 0.664
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