Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLIILTVILVLVIVLLITSLYVVKQQTVAIIERFGKYQKTATSGIHIRVPLGIDKIAARVQLRLLQSEIIVETKTKDNVFVTLNIATQYRVNENNVTDAYYKLIKPEAQIKSYIEDALRSSVPKLTLDELFEKKDEIALEVQHQVAEEMSTYGYIIVKTLITKVEPDAEVKQSMNEINAAQRKRVAAQELANADKIKIVTAAEAEAEKDRLHGVGIAQQRK-AIVDGLADSIQELKDANVTLTEEQIMSILL-TNQYLDTLNTFAINGNQTIFLPNNPEGVEDIRTQVLSALKTR |
1KMH Chain:A ((354-449)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------IRPAINVGISVSRVGSAAQIK-AMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTV-EEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFT |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KMH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 4612 for 525 contacts (8.8/contact) +
2D Compatibility (PS) -9979 + (NN) -1224 + (LL) 16768
1D Compatibility (HY) -4800 + (ID) 1400
Total energy: 3977.0 ( 7.58 by residue)
QMean score : 0.315
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