Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKNSTLTKLTRVAILSALCVVLRYAFA-PLPN----IQPITAIFLITVVLFDLKEGVATVTITMLVSSFLMGFGPWVFLQIISFTLILCLWKFLIYPLTKAVCFGKITEVVLQTFFAGGLGVVYGVIIDTCFAWLYHMPWWTYVLAGLSFNMAHALSTCLFYPLLLPILRRFRNEKIH
4HZU Chain:S ((1-164))
-MTKGSLKENTIAAVLIAMTVALSILVVIPIPATKGIVTLCEVGIYTSAILYGRRMGLLVGGASGFLIDILTGYPVWCLFSLVIHGTQGLVVGWLLPRHHKG------IRSMLLPLLVGSLVMVIGYCLATTLLF-----GWPAGLASIFGNVVQVGFGAGVTLSIVGPLTRLKPD---
General information:
TITO was launched using:
RESULT:
Template:
4HZU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175838 for 1270 contacts (-138.5/contact) +
2D Compatibility (PS) -15985 + (NN) -3869 + (LL) 1376
1D Compatibility (HY) -10800 + (ID) 1400
Total energy: -206516.0 ( -162.61 by residue)
QMean score : 0.235
(partial model without unconserved sides chains):
PDB file :
Tito_4HZU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HZU-query.scw
PDB file :
Tito_Scwrl_4HZU.pdb
: