Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIKKMLFGSYDYHKISEDGKEKLSIKIDSGWVIGLSILGLIGWLVLK
2KNC Chain:B ((698-714))
-----------------------------LSVMGAILLIGLAALLI--
General information:
TITO was launched using:
RESULT:
Template:
2KNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4344 for 59 contacts (-73.6/contact) +
2D Compatibility (PS) -1509 + (NN) 943 + (LL) 2040
1D Compatibility (HY) -2800 + (ID) 150
Total energy: -5820.0 ( -98.64 by residue)
QMean score : 0.263
(partial model without unconserved sides chains):
PDB file :
Tito_2KNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KNC-query.scw
PDB file :
Tito_Scwrl_2KNC.pdb
: