Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLIKYILSFENIIAIFFIVLFGLLLIRIEPVNNSVYSIISGIAIDKVIIVIISSFVIAIFSAFFIIDILEIIFHLKIDSLFLIAYLFFAISLGFGLLKVLTESQFSLLSAFIAFPLFLIFPKLFEKIVNNRKINQKDNKNQK
1S5L Chain:T ((1-31))
-METITYVFIFACIIALFFFAIFFREPPRITKNLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGA
General information:
TITO was launched using:
RESULT:
Template:
1S5L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12093 for 177 contacts (-68.3/contact) +
2D Compatibility (PS) -4699 + (NN) 2994 + (LL) 208
1D Compatibility (HY) -2800 + (ID) 550
Total energy: -16940.0 ( -95.71 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_1S5L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S5L-query.scw
PDB file :
Tito_Scwrl_1S5L.pdb
: