Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTVNLDWDNLGFAYRKLPFRYISHFKDGKWDDGKLTDDATLHISESSPALHYGQQAFEGLKAYRTKDGSIQLFRPDQNAERLQRTADRLLMPHVPTDKFIAAVKSVVRANEEFVPPYGTGATLYIRPLLIGVGDIIGVKPAEEYIFTVFAMPVGSYFKGGLTPTNFIVSKEYDRAAPNGTGAAKVGGNYAASLLPGKYAHEKQFSDVIYLDPATHTKIEEVGAANFFGITKDN----QFIT-PLSPSILPSITKYSLLYLAKERFGMEAIEGDVFVDELDKFTEAG------ACGTAAVISPIGGIQNGD-DFHVFYSETEVGPA-TRKLYDELVGIQFGDVEAPEGWIYKVD |
| 2HGW Chain:A ((40-365)) | ---------------------MVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPD-AAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVG------VTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDH-QLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVAPVHRILYKDRNLHI--PTMENGPELILRFQKELKEIQYG-IRAHE-WMFPV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HGW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -114704 for 2335 contacts (-49.1/contact) +
2D Compatibility (PS) -32958 + (NN) -15138 + (LL) 1328
1D Compatibility (HY) -28400 + (ID) 4800
Total energy: -194672.0 ( -83.37 by residue)
QMean score : 0.432
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