Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKVRIYHNPNCGTSRNVLAIIRHCGIEPEIIYYLKTPPSRMELVELLLEM-KLSARELLRTDVPAYEKFNLESSSVTDEEMIDAMIQDPILINRPIVVTSKGAKLCRPCEEILTILPVKMEKDFVKEDGQIIQSL
1Z3E Chain:A ((3-119))
---VTLYTSPSCTSCRKARAWLEEHEI-PFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMPLQDLYRLINEHPGLLRRPIIIDEKRLQVGYNEDEIRRFLPRKV---------------
General information:
TITO was launched using:
RESULT:
Template:
1Z3E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89578 for 785 contacts (-114.1/contact) +
2D Compatibility (PS) -12209 + (NN) -1258 + (LL) 1612
1D Compatibility (HY) -6800 + (ID) 1350
Total energy: -109583.0 ( -139.60 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_1Z3E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z3E-query.scw
PDB file :
Tito_Scwrl_1Z3E.pdb
: