Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDELKKLAGVTAAKYVKNGMIVGLGTGSTAYFFVEEIGRRVKEEGLQ-VVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKLPVEVVRYGSERLFRVFKSKGYCPSFRETEGDRFITDMGNYIIDLDLKKIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK
1UJ6 Chain:A ((5-225))
LESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLGRGPVPVEIVPFGYRATLKAIADLGGEPELRMDGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVEELLP
General information:
TITO was launched using:
RESULT:
Template:
1UJ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117711 for 1956 contacts (-60.2/contact) +
2D Compatibility (PS) -24092 + (NN) -10567 + (LL) 204
1D Compatibility (HY) -16000 + (ID) 4700
Total energy: -172866.0 ( -88.38 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_1UJ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UJ6-query.scw
PDB file :
Tito_Scwrl_1UJ6.pdb
: