Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDLEKIIKAIKSDSQNQNYTENGIDPLFAAPKTARINIVGQAPGLKTQEARLYWKDKSGDRLRQWL---GVDEETFYHSGKFAVLPLDFYYPGKGKSGDLPPRKGFAEKWH-PLILKEMPNV--QLTLLVGQYAQKYYLGSSAHKNLTETVKSYKDYLPD-YLPLVHPSPRNQIWLKKNPWFEKDLIVDLQKIVADILKD
1UI0 Chain:A ((2-183))
--TLELLQAQAQNCTACRLMEGRTRVVFGEGNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPREEVYITNIVKCRPP----------QNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGE--KVSITKVRGKWYEWHGIKVFPMFHPAYLLRNPSRAPGSPKHLTWLDIQEVKRALDAL
General information:
TITO was launched using:
RESULT:
Template:
1UI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32112 for 1417 contacts (-22.7/contact) +
2D Compatibility (PS) -18370 + (NN) -4954 + (LL) 232
1D Compatibility (HY) -7600 + (ID) 1550
Total energy: -64354.0 ( -45.42 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_1UI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UI0-query.scw
PDB file :
Tito_Scwrl_1UI0.pdb
: