Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPKYQRILIKLSGEALAGDKGVGIDIPTVQSIAKEIAEVHNSGVQIALVIGGGNLWRGEPAAEAGM-DRVQADYTGMLGTVMNALVMADSLQQYGVDTRVQTAIPMQTVAEPYVRGRALRHLEKDRIVVFGAGIGSPYFSTDTTAALRAAEIEAEAILMAKNGVDGVYNADPKKDANAVKFDELTHVEVIKRGLKIMDATASTISMDNDIDLVVFNMNETGNIKRVVLGEQIGTTVSNKASE
4A7W Chain:A ((6-233))
---KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNII---------IIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATK-VDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK----
General information:
TITO was launched using:
RESULT:
Template:
4A7W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155546 for 1757 contacts (-88.5/contact) +
2D Compatibility (PS) -23777 + (NN) -9885 + (LL) 392
1D Compatibility (HY) -22800 + (ID) 5000
Total energy: -216616.0 ( -123.29 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_4A7W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4A7W-query.scw
PDB file :
Tito_Scwrl_4A7W.pdb
: