Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYTFYEYPKCTTCRSAKKELTELGLTFEAIDIKSNPPKASLLKELLENSPYDLKKFFNTSGNSYRELGL-KDKFDDLTLDQALDLLASDGMLIKRPLLVKDNKILQIGYRTKYKDLNLV
1SK2 Chain:A ((5-98))
--TIYHNPACGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADMGISVRALLAKNVEPYEQLGLAEDKFTD---DQLIDFMLQHPILINRPIVVTPLGTRLCRPSEVVLDILQD
General information:
TITO was launched using:
RESULT:
Template:
1SK2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38902 for 619 contacts (-62.8/contact) +
2D Compatibility (PS) -9790 + (NN) -1541 + (LL) 704
1D Compatibility (HY) -8000 + (ID) 1450
Total energy: -58979.0 ( -95.28 by residue)
QMean score : 0.719
(partial model without unconserved sides chains):
PDB file :
Tito_1SK2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SK2-query.scw
PDB file :
Tito_Scwrl_1SK2.pdb
: